diff --git a/protected/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java b/protected/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java index ee4b8910d..92c8742ac 100644 --- a/protected/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java +++ b/protected/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java @@ -68,7 +68,7 @@ import java.util.List; import java.util.Map; /** - * Variant confidence (from the QUAL field) / unfiltered depth of non-reference samples. + * Variant confidence (from the QUAL field) / unfiltered depth of non-reference samples. Note that the QD is also normalized by event length. * * Low scores are indicative of false positive calls and artifacts. Note that QualByDepth requires sequencing * reads associated with the samples with polymorphic genotypes.