diff --git a/python/makeMetricsFilesForFirehose.py b/python/makeMetricsFilesForFirehose.py new file mode 100755 index 000000000..e13d8d1fc --- /dev/null +++ b/python/makeMetricsFilesForFirehose.py @@ -0,0 +1,13 @@ +#!/usr/bin/env python + +import sys +import os + +bam_file = sys.argv[1] +project = sys.argv[2] +directory = bam_file.rsplit("/",1)[0]+"/" +sample_id = bam_file.rsplit("/",1)[1].rsplit(".",1)[0] +is_metrics = directory+sample_id+".insert_size_metrics" +his_metrics = directory+sample_id+".hybrid_selection_metrics" +ali_metrics = directory+sample_id+".alignment_summary_metrics" +os.system("zip -j "+project+"_"+sample_id+"_sequencing_metrics"+" "+is_metrics+" "+his_metrics+" "+ali_metrics)