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Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Ryan Poplin 2011-10-17 15:56:19 -04:00
parent 1e6794c539 92e1cbfb6c
commit e45fcb66eb
1 changed files with 4 additions and 2 deletions
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6
public/java/src/org/broadinstitute/sting/commandline/ArgumentTypeDescriptor.java
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@ -379,8 +379,10 @@ class RodBindingArgumentTypeDescriptor extends ArgumentTypeDescriptor {
}
if ( tribbleType == null )
if ( ! file.canRead() | ! file.isFile() ) {
throw new UserException.CouldNotReadInputFile(file, "file does exist or couldn't be read");
if ( ! file.exists() ) {
throw new UserException.CouldNotReadInputFile(file, "file does not exist");
} else if ( ! file.canRead() || ! file.isFile() ) {
throw new UserException.CouldNotReadInputFile(file, "file could not be read");
} else {
throw new UserException.CommandLineException(
String.format("No tribble type was provided on the command line and the type of the file could not be determined dynamically. " +