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standardizing the name of the scripts and fixing some bugs with the remapping. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5245 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
carneiro 2011-02-15 16:19:58 +00:00
parent 87e19a17ae
commit e45b699ac0
2 changed files with 1 additions and 0 deletions
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lua/MergeIntervals.lua → lua/mergeIntervals.lua
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1
lua/remapAmplicons.lua
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@ -53,6 +53,7 @@ local function processSamHeaderLine(l, amplicons)
if not header.sq then header.sq = {} end if not header.sq then header.sq = {} end
local ampName = l:match("@SQ%s+SN:ps%d+_([%w%p_]+).*") local ampName = l:match("@SQ%s+SN:ps%d+_([%w%p_]+).*")
local chr = amplicons[ampName].chr local chr = amplicons[ampName].chr
print("DEBUG: ", ampName, chr)
header.sq[chr] = chrlength[chr] header.sq[chr] = chrlength[chr]
end end
end end