diff --git a/lua/MergeIntervals.lua b/lua/mergeIntervals.lua similarity index 100% rename from lua/MergeIntervals.lua rename to lua/mergeIntervals.lua diff --git a/lua/remapAmplicons.lua b/lua/remapAmplicons.lua index c858b01bf..df20cfa27 100644 --- a/lua/remapAmplicons.lua +++ b/lua/remapAmplicons.lua @@ -53,6 +53,7 @@ local function processSamHeaderLine(l, amplicons) if not header.sq then header.sq = {} end local ampName = l:match("@SQ%s+SN:ps%d+_([%w%p_]+).*") local chr = amplicons[ampName].chr +print("DEBUG: ", ampName, chr) header.sq[chr] = chrlength[chr] end end