standardizing the name of the scripts and fixing some bugs with the remapping.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5245 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-15 16:19:58 +00:00 · 2011-02-15 16:19:58 +00:00 · e45b699ac0
parent 87e19a17ae
commit e45b699ac0
2 changed files with 1 additions and 0 deletions
--- a/lua/mergeIntervals.lua
+++ b/lua/mergeIntervals.lua
--- a/lua/remapAmplicons.lua
+++ b/lua/remapAmplicons.lua
@ -53,6 +53,7 @@ local function processSamHeaderLine(l, amplicons)
    if not header.sq then header.sq = {} end
    local ampName = l:match("@SQ%s+SN:ps%d+_([%w%p_]+).*")
    local chr = amplicons[ampName].chr
+print("DEBUG: ", ampName, chr)
    header.sq[chr] = chrlength[chr]
  end
 end