From e3f89fb0549c8f2c751338ffeeda76678c4d94c4 Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Thu, 2 Aug 2012 11:33:21 -0400
Subject: [PATCH] Missing/malformed GATK report files are user errors

---
 .../src/org/broadinstitute/sting/gatk/report/GATKReport.java  | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/report/GATKReport.java b/public/java/src/org/broadinstitute/sting/gatk/report/GATKReport.java
index bec1ea543..47bc48f81 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/report/GATKReport.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/report/GATKReport.java
@@ -89,9 +89,9 @@ public class GATKReport {
             reader = new BufferedReader(new FileReader(file));
             reportHeader = reader.readLine();
         } catch (FileNotFoundException e) {
-            throw new ReviewedStingException("Could not open file : " + file);
+            throw new UserException.CouldNotReadInputFile(file, "it does not exist");
         } catch (IOException e) { 
-            throw new ReviewedStingException("Could not read file : " + file);                            
+            throw new UserException.CouldNotReadInputFile(file, e);
         }