diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java index 174e810c2..e04f5bc4b 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java @@ -170,9 +170,9 @@ public class TableRecalibrationWalker extends ReadWalker requestedCovariates = new ArrayList(); // List of covariates to be used in this calculation - private static final Pattern COMMENT_PATTERN = Pattern.compile("^#.*"); - private static final Pattern OLD_RECALIBRATOR_HEADER = Pattern.compile("^rg,.*"); - private static final Pattern COVARIATE_PATTERN = Pattern.compile("^ReadGroup,QualityScore,.*"); + public static final Pattern COMMENT_PATTERN = Pattern.compile("^#.*"); + public static final Pattern OLD_RECALIBRATOR_HEADER = Pattern.compile("^rg,.*"); + public static final Pattern COVARIATE_PATTERN = Pattern.compile("^ReadGroup,QualityScore,.*"); public static final String EOF_MARKER = "EOF"; private long numReadsWithMalformedColorSpace = 0;