From e35a67b3cc0627b8e68b489810ac6a69e1955775 Mon Sep 17 00:00:00 2001 From: carneiro Date: Fri, 11 Mar 2011 17:54:53 +0000 Subject: [PATCH] changed the name of the parameter to make the wiki more uniform. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5426 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/variantutils/SelectVariants.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java index b4725b81b..792900a4e 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java @@ -73,7 +73,7 @@ public class SelectVariants extends RodWalker { @Argument(fullName="family", shortName="fam", doc="If provided, genotypes in will be examined for mendelian violations: this argument is a string formatted as dad+mom=child where these parameters determine which sample names are examined", required=false) private String FAMILY_STRUCTURE = ""; - @Argument(fullName="mendelian_violation_quality", shortName="mvq", fullName="mendelianViolationQualThreshold", doc="Minimum genotype QUAL score for each trio member required to accept a site as a violation", required=false) + @Argument(fullName="mendelianViolationQualThreshold", shortName="mvq", doc="Minimum genotype QUAL score for each trio member required to accept a site as a violation", required=false) private double MENDELIAN_VIOLATION_QUAL_THRESHOLD = 0;