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changed the name of the parameter to make the wiki more uniform. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5426 348d0f76-0448-11de-a6fe-93d51630548a
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carneiro 2011-03-11 17:54:53 +00:00
parent 4a84a81d17
commit e35a67b3cc
1 changed files with 1 additions and 1 deletions
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java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java
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@ -73,7 +73,7 @@ public class SelectVariants extends RodWalker<Integer, Integer> {
@Argument(fullName="family", shortName="fam", doc="If provided, genotypes in will be examined for mendelian violations: this argument is a string formatted as dad+mom=child where these parameters determine which sample names are examined", required=false)
private String FAMILY_STRUCTURE = "";
@Argument(fullName="mendelian_violation_quality", shortName="mvq", fullName="mendelianViolationQualThreshold", doc="Minimum genotype QUAL score for each trio member required to accept a site as a violation", required=false)
@Argument(fullName="mendelianViolationQualThreshold", shortName="mvq", doc="Minimum genotype QUAL score for each trio member required to accept a site as a violation", required=false)
private double MENDELIAN_VIOLATION_QUAL_THRESHOLD = 0;