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Added "#Family ID" as a possible header value for PlinkRod ... since that's in the new sequenom headers for pilot 3 validation 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3266 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
chartl 2010-04-28 18:38:33 +00:00
parent 5dce16a8f1
commit e2ff4167af
1 changed files with 1 additions and 1 deletions
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java/src/org/broadinstitute/sting/gatk/refdata/PlinkRod.java
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@ -19,7 +19,7 @@ public class PlinkRod extends BasicReferenceOrderedDatum implements Iterator<Pli
public static final String SEQUENOM_NO_BASE = "-"; public static final String SEQUENOM_NO_BASE = "-";
private final Set<String> headerEntries = new HashSet<String>(Arrays.asList("#Family ID","Individual ID","Sex", private final Set<String> headerEntries = new HashSet<String>(Arrays.asList("#Family ID","Individual ID","Sex",
"Paternal ID","Maternal ID","Phenotype", "FID","IID","PAT","MAT","SEX","PHENOTYPE")); "Paternal ID","Maternal ID","Phenotype", "FID","IID","PAT","MAT","SEX","PHENOTYPE","#Individual ID"));
private final byte SNP_MAJOR_MODE = 1; private final byte SNP_MAJOR_MODE = 1;
private PlinkVariantInfo currentVariant; private PlinkVariantInfo currentVariant;