From e2ff4167af1d8de5676a0d322da846d217c6eb8e Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 28 Apr 2010 18:38:33 +0000
Subject: [PATCH] Added "#Family ID" as a possible header value for PlinkRod
 ... since that's in the new sequenom headers for pilot 3 validation

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3266 348d0f76-0448-11de-a6fe-93d51630548a
---
 java/src/org/broadinstitute/sting/gatk/refdata/PlinkRod.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/PlinkRod.java b/java/src/org/broadinstitute/sting/gatk/refdata/PlinkRod.java
index 49938141e..d17eb5a0b 100644
--- a/java/src/org/broadinstitute/sting/gatk/refdata/PlinkRod.java
+++ b/java/src/org/broadinstitute/sting/gatk/refdata/PlinkRod.java
@@ -19,7 +19,7 @@ public class PlinkRod extends BasicReferenceOrderedDatum implements Iterator<Pli
     public static final String SEQUENOM_NO_BASE = "-";
 
     private final Set<String> headerEntries = new HashSet<String>(Arrays.asList("#Family ID","Individual ID","Sex",
-                "Paternal ID","Maternal ID","Phenotype", "FID","IID","PAT","MAT","SEX","PHENOTYPE"));
+                "Paternal ID","Maternal ID","Phenotype", "FID","IID","PAT","MAT","SEX","PHENOTYPE","#Individual ID"));
     private final byte SNP_MAJOR_MODE = 1;
 
     private PlinkVariantInfo currentVariant;