Forgot to update 2 integration test md5's (in this cases, changes are legit because of the code revamp of AD, it's simpler if AD is not output when a site is not variant, as genotype DP conveys the same information)
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@ -174,12 +174,12 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
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@Test
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public void testOutputParameterAllConfident() {
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testOutputParameters("--output_mode EMIT_ALL_CONFIDENT_SITES", "8084a847f4a3c53a030e8c52eec35cea");
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testOutputParameters("--output_mode EMIT_ALL_CONFIDENT_SITES", "bec7bcc50b42782e20a970db11201399");
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}
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@Test
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public void testOutputParameterAllSites() {
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testOutputParameters("--output_mode EMIT_ALL_SITES", "931e396f2a6903a291e813c64c18f8b5");
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testOutputParameters("--output_mode EMIT_ALL_SITES", "09494afd12cef97293ed35d1a972f623");
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}
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private void testOutputParameters(final String args, final String md5) {
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