From e26da9b047e0b99ab4b3fa759d379f071afe326d Mon Sep 17 00:00:00 2001 From: kiran Date: Mon, 31 Jan 2011 03:31:54 +0000 Subject: [PATCH] Changed column-key names to not have spaces, as GATKReport gets very upset about this. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5131 348d0f76-0448-11de-a6fe-93d51630548a --- .../walkers/newvarianteval/evaluators/IndelStatistics.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/newvarianteval/evaluators/IndelStatistics.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/newvarianteval/evaluators/IndelStatistics.java index 59371aa81..1dd5c2237 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/newvarianteval/evaluators/IndelStatistics.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/newvarianteval/evaluators/IndelStatistics.java @@ -75,9 +75,9 @@ public class IndelStatistics extends VariantEvaluator { COLUMN_KEYS[4] = "number_homozygous_insertions"; COLUMN_KEYS[5] = "number_het_deletions"; COLUMN_KEYS[6] = "number_homozygous_deletions"; - COLUMN_KEYS[7] = "number of homozygous reference sites"; - COLUMN_KEYS[8] = "number of complex events"; - COLUMN_KEYS[9] = "number of long indels"; + COLUMN_KEYS[7] = "number_of_homozygous_reference_sites"; + COLUMN_KEYS[8] = "number_of_complex_events"; + COLUMN_KEYS[9] = "number_of_long_indels"; for (int k=NUM_SCALAR_COLUMNS; k < NUM_SCALAR_COLUMNS+ 2*INDEL_SIZE_LIMIT+1; k++) COLUMN_KEYS[k] = "indel_size_len"+Integer.valueOf(index2len(k));