From e242a8f1432685c0466f2ba503be97fc0bf206cd Mon Sep 17 00:00:00 2001 From: kiran Date: Sun, 8 Aug 2010 05:56:57 +0000 Subject: [PATCH] Put single quotes around the regex. This isn't strictly necessary through the integration test machinery, but *is* necessary at the console, and it's convenient to be able to cut and paste this. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3977 348d0f76-0448-11de-a6fe-93d51630548a --- .../walkers/variantutils/SelectVariantsIntegrationTest.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsIntegrationTest.java index 10fe44bfe..f0712e9ae 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsIntegrationTest.java @@ -15,7 +15,7 @@ public class SelectVariantsIntegrationTest extends WalkerTest { String testfile = validationDataLocation + "test.filtered.maf_annotated.vcf"; WalkerTestSpec spec = new WalkerTestSpec( - baseTestString(" -sn A -sn [CDEH] -env -ef -select 'AF < 0.2' -B variant,VCF," + testfile), + baseTestString(" -sn A -sn '[CDEH]' -env -ef -select 'AF < 0.2' -B variant,VCF," + testfile), 1, Arrays.asList("3a15628b5980031c629c0c33e7e60b40") );