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Testing the 'bug fix' process #2 (changes are irrelevant) 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6047 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
droazen 2011-06-22 22:54:37 +00:00
parent 2e3d6754cd
commit e148a75c32
1 changed files with 2 additions and 2 deletions
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4
scala/qscript/oneoffs/carneiro/justClean.scala
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@ -45,7 +45,7 @@ class justClean extends QScript {
target.mismatchFraction = 0.0 target.mismatchFraction = 0.0
target.rodBind :+= RodBind("dbsnp", "VCF", dbSNP) target.rodBind :+= RodBind("dbsnp", "VCF", dbSNP)
target.rodBind :+= RodBind("indels", "VCF", indels) target.rodBind :+= RodBind("indels", "VCF", indels)
target.memoryLimit = 6 target.memoryLimit = 4
target.jobName = queueLogDir + tIntervals + ".atarget" target.jobName = queueLogDir + tIntervals + ".atarget"
target.jarFile = GATKjar target.jarFile = GATKjar
target.scatterCount = 84 target.scatterCount = 84
@ -62,7 +62,7 @@ class justClean extends QScript {
clean.doNotUseSW = false clean.doNotUseSW = false
clean.jobName = queueLogDir + outBam + ".clean" clean.jobName = queueLogDir + outBam + ".clean"
clean.jarFile = GATKjar clean.jarFile = GATKjar
clean.memoryLimit = 8 clean.memoryLimit = 6
clean.scatterCount = 84 clean.scatterCount = 84
add(target, clean); add(target, clean);