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Merge pull request #379 from broadinstitute/mc_dpp_updates_part2 

Including SplitByRG in the FullProcessingPipeline
This commit is contained in:
Eric Banks 2013-08-19 18:42:12 -07:00
parent 6663d48ffe e991307eb5
commit e1174a582d
1 changed files with 1 additions and 1 deletions
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2
public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
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@ -73,7 +73,7 @@ object QScriptUtils {
/** /**
* Check if there are multiple samples in a BAM file * Check if there are multiple samples in a BAM file
*/ */
def hasMultipleSamples(readGroups: java.util.List[SAMReadGroupRecord]): Boolean = { def hasMultipleSamples(readGroups: Seq[SAMReadGroupRecord]): Boolean = {
var sample: String = "" var sample: String = ""
for (r <- readGroups) { for (r <- readGroups) {
if (sample.isEmpty) if (sample.isEmpty)