changed variable declaration from concrete class to interface
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@92 348d0f76-0448-11de-a6fe-93d51630548a
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@ -22,10 +22,10 @@ public class GenomeLoc implements Comparable<GenomeLoc> {
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//
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//
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// Ugly global variable defining the optional ordering of contig elements
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// Ugly global variable defining the optional ordering of contig elements
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//
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//
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public static HashMap<String, Integer> refContigOrdering = null;
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public static Map<String, Integer> refContigOrdering = null;
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public static HashMap<String, String> interns = null;
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public static HashMap<String, String> interns = null;
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public static void setContigOrdering(HashMap<String, Integer> rco) {
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public static void setContigOrdering(Map<String, Integer> rco) {
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refContigOrdering = rco;
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refContigOrdering = rco;
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interns = new HashMap<String, String>();
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interns = new HashMap<String, String>();
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for ( String contig : rco.keySet() )
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for ( String contig : rco.keySet() )
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