From e09af2ef70c98036c643d205832b82d1118f7015 Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 18 Mar 2009 21:50:47 +0000
Subject: [PATCH] changed variable declaration from concrete class to interface

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@92 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../java/src/org/broadinstitute/sting/utils/GenomeLoc.java    | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java b/playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java
index a88c93c14..0221662a5 100644
--- a/playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java
+++ b/playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java
@@ -22,10 +22,10 @@ public class GenomeLoc implements Comparable<GenomeLoc> {
     //
     // Ugly global variable defining the optional ordering of contig elements
     //
-    public static HashMap<String, Integer> refContigOrdering = null;
+    public static Map<String, Integer> refContigOrdering = null;
     public static HashMap<String, String> interns = null;
 
-    public static void setContigOrdering(HashMap<String, Integer> rco) {
+    public static void setContigOrdering(Map<String, Integer> rco) {
         refContigOrdering = rco;
         interns = new HashMap<String, String>();
         for ( String contig : rco.keySet() )