diff --git a/playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java b/playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java index a88c93c14..0221662a5 100644 --- a/playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java +++ b/playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java @@ -22,10 +22,10 @@ public class GenomeLoc implements Comparable { // // Ugly global variable defining the optional ordering of contig elements // - public static HashMap refContigOrdering = null; + public static Map refContigOrdering = null; public static HashMap interns = null; - public static void setContigOrdering(HashMap rco) { + public static void setContigOrdering(Map rco) { refContigOrdering = rco; interns = new HashMap(); for ( String contig : rco.keySet() )