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changed variable declaration from concrete class to interface 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@92 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2009-03-18 21:50:47 +00:00
parent 708ada3e99
commit e09af2ef70
1 changed files with 2 additions and 2 deletions
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4
playground/java/src/org/broadinstitute/sting/utils/GenomeLoc.java
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@ -22,10 +22,10 @@ public class GenomeLoc implements Comparable<GenomeLoc> {
//
// Ugly global variable defining the optional ordering of contig elements
//
public static HashMap<String, Integer> refContigOrdering = null;
public static Map<String, Integer> refContigOrdering = null;
public static HashMap<String, String> interns = null;
public static void setContigOrdering(HashMap<String, Integer> rco) {
public static void setContigOrdering(Map<String, Integer> rco) {
refContigOrdering = rco;
interns = new HashMap<String, String>();
for ( String contig : rco.keySet() )