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No longer print out 0 reads were filtered out... message when there were no reads scene at all 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4575 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-10-26 20:22:16 +00:00
parent b085648141
commit e02aac0743
1 changed files with 5 additions and 4 deletions
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1
java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java
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@ -123,6 +123,7 @@ public abstract class TraversalEngine<M,T,WalkerType extends Walker<M,T>,Provide
nSkippedReads += countsByFilter.getValue(); nSkippedReads += countsByFilter.getValue();
logger.info(String.format("Total runtime %.2f secs, %.2f min, %.2f hours", elapsed, elapsed / 60, elapsed / 3600)); logger.info(String.format("Total runtime %.2f secs, %.2f min, %.2f hours", elapsed, elapsed / 60, elapsed / 3600));
if ( cumulativeMetrics.getNumReadsSeen() > 0 )
logger.info(String.format("%d reads were filtered out during traversal out of %d total (%.2f%%)", logger.info(String.format("%d reads were filtered out during traversal out of %d total (%.2f%%)",
nSkippedReads, nSkippedReads,
cumulativeMetrics.getNumReadsSeen(), cumulativeMetrics.getNumReadsSeen(),