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Cleanup of GATK-GSA-Pipeline to support the new naming. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2658 348d0f76-0448-11de-a6fe-93d51630548a
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hanna 2010-01-21 22:17:35 +00:00
parent cc3b818268
commit e00cb688ac
1 changed files with 7 additions and 7 deletions
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14
packages/GATK-GSA-Pipeline.xml
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@ -7,13 +7,13 @@
<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" /> <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
<resource-bundle file="StingText.properties" /> <resource-bundle file="StingText.properties" />
<modules> <modules>
<module name="QualityScoresRecalibration.xml" /> <module file="QualityScoresRecalibration.xml" />
<module name="LocalRealignmentAroundIndels.xml" /> <module file="LocalRealignmentAroundIndels.xml" />
<module name="UnifiedGenotyper.xml" /> <module file="UnifiedGenotyper.xml" />
<module name="VariantFiltration.xml" /> <module file="VariantFiltration.xml" />
<module name="VariantAnnotator.xml" /> <module file="VariantAnnotator.xml" />
<module name="VariantEval.xml" /> <module file="VariantEval.xml" />
<module name="FindContaminatingReadGroups.xml" /> <module file="FindContaminatingReadGroups.xml" />
</modules> </modules>
<dependencies> <dependencies>
<!-- Filters --> <!-- Filters -->