From e00cb688acfd464e5bfef8d1e9112546524b88d2 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 21 Jan 2010 22:17:35 +0000
Subject: [PATCH] Cleanup of GATK-GSA-Pipeline to support the new naming.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2658 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/GATK-GSA-Pipeline.xml | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/packages/GATK-GSA-Pipeline.xml b/packages/GATK-GSA-Pipeline.xml
index 0d64f4224..6f3b9497e 100644
--- a/packages/GATK-GSA-Pipeline.xml
+++ b/packages/GATK-GSA-Pipeline.xml
@@ -7,13 +7,13 @@
     <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
     <resource-bundle file="StingText.properties" />
     <modules>
-      <module name="QualityScoresRecalibration.xml" />
-      <module name="LocalRealignmentAroundIndels.xml" />
-      <module name="UnifiedGenotyper.xml" />
-      <module name="VariantFiltration.xml" />
-      <module name="VariantAnnotator.xml" />
-      <module name="VariantEval.xml" />
-      <module name="FindContaminatingReadGroups.xml" />
+      <module file="QualityScoresRecalibration.xml" />
+      <module file="LocalRealignmentAroundIndels.xml" />
+      <module file="UnifiedGenotyper.xml" />
+      <module file="VariantFiltration.xml" />
+      <module file="VariantAnnotator.xml" />
+      <module file="VariantEval.xml" />
+      <module file="FindContaminatingReadGroups.xml" />
     </modules>
     <dependencies>
       <!-- Filters -->