diff --git a/packages/GATK-GSA-Pipeline.xml b/packages/GATK-GSA-Pipeline.xml
index 0d64f4224..6f3b9497e 100644
--- a/packages/GATK-GSA-Pipeline.xml
+++ b/packages/GATK-GSA-Pipeline.xml
@@ -7,13 +7,13 @@
     <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
     <resource-bundle file="StingText.properties" />
     <modules>
-      <module name="QualityScoresRecalibration.xml" />
-      <module name="LocalRealignmentAroundIndels.xml" />
-      <module name="UnifiedGenotyper.xml" />
-      <module name="VariantFiltration.xml" />
-      <module name="VariantAnnotator.xml" />
-      <module name="VariantEval.xml" />
-      <module name="FindContaminatingReadGroups.xml" />
+      <module file="QualityScoresRecalibration.xml" />
+      <module file="LocalRealignmentAroundIndels.xml" />
+      <module file="UnifiedGenotyper.xml" />
+      <module file="VariantFiltration.xml" />
+      <module file="VariantAnnotator.xml" />
+      <module file="VariantEval.xml" />
+      <module file="FindContaminatingReadGroups.xml" />
     </modules>
     <dependencies>
       <!-- Filters -->