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the doc on File.length states it returns 0L if it doesn't exist, added a check to make sure it exists (and length < 1) 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1450 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-08-21 05:55:17 +00:00
parent cd711d7697
commit df9133c90b
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/utils/GenomeLocParser.java
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@ -324,7 +324,7 @@ public class GenomeLocParser {
File inputFile = new File(file_name);
// sometimes we see an empty file passed as a parameter, if so return an empty list
if (inputFile.length() < 1) return new ArrayList<GenomeLoc>();
if (inputFile.exists() && inputFile.length() < 1) return new ArrayList<GenomeLoc>();
IntervalList il = IntervalList.fromFile(inputFile);
// iterate through the list of merged intervals and add then as GenomeLocs