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Fix NullPointerException when priority list is left out 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3600 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2010-06-21 13:46:54 +00:00
parent c806ffba5f
commit df1cadc4c9
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/vcf/VCFCombine.java
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@ -116,7 +116,7 @@ public class VCFCombine extends RodWalker<VCFRecord, VCFWriter> {
private void validateAnnotateUnionArguments(String[] priority) { private void validateAnnotateUnionArguments(String[] priority) {
Set<RMDTrack> rods = VCFUtils.getRodVCFs(getToolkit()); Set<RMDTrack> rods = VCFUtils.getRodVCFs(getToolkit());
if ( rods.size() != priority.length ) { if ( priority == null || rods.size() != priority.length ) {
throw new StingException("A complete priority list must be provided when annotateUnion is provided"); throw new StingException("A complete priority list must be provided when annotateUnion is provided");
} }
if ( priority.length != 2 ) { if ( priority.length != 2 ) {