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Set default value of useLocusIteratorByHanger to FALSE. Otherwise the -LIBH flag is useless and there'd be no wayto "unset" the 'true' value. Old version was (always) using LocusIteratorByHanger. Now default iterator is indeed LocusIteratorByState, and -LIBH will switch back to the old one 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1556 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2009-09-09 15:09:09 +00:00
parent 0df6a9da5c
commit df11618092
1 changed files with 1 additions and 1 deletions
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java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java
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@ -136,7 +136,7 @@ public class GATKArgumentCollection {
@Element(required = false)
@Argument(fullName = "LocusIteratorByHanger", shortName = "LIBH", doc = "Should we use the new LocusIteratorByState or the old LocusIteratorByHanger?", required = false)
public Boolean useLocusIteratorByHanger = true;
public Boolean useLocusIteratorByHanger = false;
/**