From df0be25afb2f1357664503f778455a978f9cbce6 Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 5 Feb 2010 18:03:16 +0000
Subject: [PATCH] ooops, no need to destroy old best's data explicitly, it will
 be done automatically of course

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2794 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/walkers/indels/IntervalCleanerWalker.java         | 1 -
 1 file changed, 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java
index 051e7e4c7..b7caee706 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java
@@ -365,7 +365,6 @@ public class  IntervalCleanerWalker extends LocusWindowWalker<Integer, Integer>
 
             //logger.debug(consensus.str +  " " + consensus.mismatchSum);
             if ( bestConsensus == null || bestConsensus.mismatchSum > consensus.mismatchSum) {
-                if ( bestConsensus != null ) bestConsensus.readIndexes.clear(); // forget the old best consensus data, do not waste memory
                 bestConsensus = consensus;
                 //logger.debug(consensus.str +  " " + consensus.mismatchSum);
             } else {