diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java index 5e34544e8..a6e45fac1 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java @@ -4,18 +4,20 @@ import org.broadinstitute.sting.utils.*; import org.broadinstitute.sting.gatk.refdata.*; import org.broadinstitute.sting.gatk.walkers.LocusWindowWalker; import org.broadinstitute.sting.gatk.walkers.WalkerName; +import org.broadinstitute.sting.gatk.walkers.ReadFilters; import org.broadinstitute.sting.gatk.LocusContext; +import org.broadinstitute.sting.gatk.filters.Platform454Filter; import org.broadinstitute.sting.utils.cmdLine.Argument; import org.broadinstitute.sting.playground.indels.*; import net.sf.samtools.*; -import net.sf.samtools.SAMFileHeader.SortOrder; import java.util.*; import java.io.File; import java.io.FileWriter; @WalkerName("IntervalCleaner") +@ReadFilters(Platform454Filter.class) public class IntervalCleanerWalker extends LocusWindowWalker { @Argument(fullName="allow454Reads", shortName="454", doc="process 454 reads", required=false) boolean allow454 = false;