zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Merge pull request #1163 from broadinstitute/ami-fix-typo-ASEReadCounter 

fix typo in the ASEReadCounter document
This commit is contained in:
Eric Banks 2015-09-21 15:46:31 -04:00
parent b1cc48da05 1ad00cc9d4
commit de97c38a30
1 changed files with 2 additions and 4 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
public/gatk-tools-public/src/main/java/org/broadinstitute/gatk/tools/walkers/rnaseq/ASEReadCounter.java
View File

@ -27,8 +27,6 @@ package org.broadinstitute.gatk.tools.walkers.rnaseq;
import htsjdk.variant.variantcontext.VariantContext; import htsjdk.variant.variantcontext.VariantContext;
import org.broadinstitute.gatk.engine.CommandLineGATK; import org.broadinstitute.gatk.engine.CommandLineGATK;
import org.broadinstitute.gatk.engine.filters.DuplicateReadFilter;
import org.broadinstitute.gatk.engine.walkers.DisabledReadFilters;
import org.broadinstitute.gatk.engine.walkers.Downsample; import org.broadinstitute.gatk.engine.walkers.Downsample;
import org.broadinstitute.gatk.engine.walkers.LocusWalker; import org.broadinstitute.gatk.engine.walkers.LocusWalker;
import org.broadinstitute.gatk.tools.walkers.coverage.CoverageUtils; import org.broadinstitute.gatk.tools.walkers.coverage.CoverageUtils;
@ -87,8 +85,8 @@ import java.util.List;
* <h3>Note</h3> * <h3>Note</h3>
* <ul> * <ul>
* <li>Like most GATK tools, this tools filters out duplicate reads by default. However, some ASE methods * <li>Like most GATK tools, this tools filters out duplicate reads by default. However, some ASE methods
* recommend including duplicate reads in the analysis, so the DuplicateReads filter can be disabled using the * recommend including duplicate reads in the analysis, so the DuplicateRead filter can be disabled using the
* "-drf DuplicateReads" flag in the command-line.</li> * "-drf DuplicateRead" flag in the command-line.</li>
* </ul> * </ul>
* <h3>Caveat</h3> * <h3>Caveat</h3>
* <ul> * <ul>