From dddf148a595af445d3a9e6ab66bf20a6d8dc3e93 Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Wed, 5 Sep 2012 16:35:32 -0400
Subject: [PATCH] Fixed bug in ThreadAllocation getTotalNumberOfThreads

-- It isnt data + cpu its data * cpu threads.
---
 .../sting/gatk/resourcemanagement/ThreadAllocation.java         | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/resourcemanagement/ThreadAllocation.java b/public/java/src/org/broadinstitute/sting/gatk/resourcemanagement/ThreadAllocation.java
index f958c9db8..c86f06c25 100644
--- a/public/java/src/org/broadinstitute/sting/gatk/resourcemanagement/ThreadAllocation.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/resourcemanagement/ThreadAllocation.java
@@ -81,7 +81,7 @@ public class ThreadAllocation {
      * @return the sum of all thread allocations in this object
      */
     public int getTotalNumThreads() {
-        return getNumDataThreads() + getNumCPUThreadsPerDataThread() + getNumIOThreads();
+        return getNumDataThreads() * getNumCPUThreadsPerDataThread() + getNumIOThreads();
     }
 
     /**