Various small improvements to the KB assessments.

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1) TP reviews with 0/0 genotypes were killing those sites and making them appear as assessed FPs even when correctly called!
Fixed this by changing the logic in the assessor to allow discordant genotypes through as FPs.
Also, isMonomorphic() in the MongoGenotype needs to check whether the genotype is discordant.
Added unit test for this case.

2) Minor code cleanup in the Assessor class.
The most important being the renaming of isUsableCall() to isNotUsableCall() since that's what it is returning.

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This commit is contained in:

Eric Banks 2013-08-08 15:13:16 -04:00

parent 1f86cf13d1

commit dd85646067

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