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Rather than just picking a few classes to be the roots of the vcf jar and 

including all dependencies, use the entire codecs.vcf and variantcontext
packages as roots.

Fix for my fix for Jim Robinson.
This commit is contained in:
Matt Hanna 2011-10-05 18:25:26 -04:00
parent b732f740d2
commit dd780dba5f
1 changed files with 4 additions and 6 deletions
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10
build.xml
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@ -545,12 +545,10 @@
<target name="vcf.jar" depends="gatk.compile,init.jar">
<jar jarfile="${dist.dir}/vcf.jar">
<fileset dir="${java.classes}">
<include name="**/utils/codecs/**/*.class"/>
<include name="**/utils/variantcontext/**/*.class"/>
<include name="org/broadinstitute/sting/utils/exceptions/**"/>
<include name="org/broadinstitute/sting/utils/help/DocumentedGATKFeature.class"/>
</fileset>
<classfileset dir="${java.classes}">
<rootfileset dir="${java.classes}" includes="org/broadinstitute/sting/utils/codecs/vcf/**/*.class" />
<rootfileset dir="${java.classes}" includes="org/broadinstitute/sting/utils/variantcontext/**/*.class" />
</classfileset>
</jar>
</target>