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Adding integration test to cover the case of a read that only covers an insertion (i.e. no M in the CIGAR string). 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5923 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2011-06-02 21:02:47 +00:00
parent d0ca6f8a9c
commit dd6d61c031
1 changed files with 10 additions and 0 deletions
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10
java/test/org/broadinstitute/sting/gatk/walkers/PrintReadsIntegrationTest.java
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@ -38,5 +38,15 @@ public class PrintReadsIntegrationTest extends WalkerTest {
Arrays.asList(params.md5));
executeTest("testPrintReads-"+params.args, spec).getFirst();
}
@Test
public void testPrintReadsReadAllInsertion() {
WalkerTestSpec spec = new WalkerTestSpec(
"-T PrintReads -R " + b37KGReference +
" -I " + validationDataLocation + "oneReadAllInsertion.bam" +
" -o %s",
Arrays.asList("6caec4f8a25befb6aba562955401af93"));
executeTest("testPrintReads-oneReadAllInsertion", spec);
}
}