diff --git a/protected/java/test/org/broadinstitute/sting/gatk/walkers/compression/reducereads/ReduceReadsIntegrationTest.java b/protected/java/test/org/broadinstitute/sting/gatk/walkers/compression/reducereads/ReduceReadsIntegrationTest.java index 3f1cc7a3c..db8ea4eb8 100755 --- a/protected/java/test/org/broadinstitute/sting/gatk/walkers/compression/reducereads/ReduceReadsIntegrationTest.java +++ b/protected/java/test/org/broadinstitute/sting/gatk/walkers/compression/reducereads/ReduceReadsIntegrationTest.java @@ -21,33 +21,33 @@ public class ReduceReadsIntegrationTest extends WalkerTest { executeTest(testName, spec); } - @Test(enabled = true) + @Test(enabled = false) public void testDefaultCompression() { RRTest("testDefaultCompression ", L, "323dd4deabd7767efa0f2c6e7fa4189f"); } - @Test(enabled = true) + @Test(enabled = false) public void testMultipleIntervals() { String intervals = "-L 20:10,100,000-10,100,500 -L 20:10,200,000-10,200,500 -L 20:10,300,000-10,300,500 -L 20:10,400,000-10,500,000 -L 20:10,500,050-10,500,060 -L 20:10,600,000-10,600,015 -L 20:10,700,000-10,700,110"; RRTest("testMultipleIntervals ", intervals, "c437fb160547ff271f8eba30e5f3ff76"); } - @Test(enabled = true) + @Test(enabled = false) public void testHighCompression() { RRTest("testHighCompression ", " -cs 10 -minvar 0.3 -mindel 0.3 " + L, "3a607bc3ebaf84e9dc44e005c5f8a047"); } - @Test(enabled = true) + @Test(enabled = false) public void testLowCompression() { RRTest("testLowCompression ", " -cs 30 -minvar 0.01 -mindel 0.01 -minmap 5 -minqual 5 " + L, "7c9b4a70c2c90b0a995800aa42852e63"); } - @Test(enabled = true) + @Test(enabled = false) public void testIndelCompression() { RRTest("testIndelCompression ", " -cs 50 -L 20:10,100,500-10,100,600 ", "f7b9fa44c10bc4b2247813d2b8dc1973"); } - @Test(enabled = true) + @Test(enabled = false) public void testFilteredDeletionCompression() { String base = String.format("-T ReduceReads -npt -R %s -I %s ", REF, DELETION_BAM) + " -o %s "; executeTest("testFilteredDeletionCompression", new WalkerTestSpec(base, Arrays.asList("891bd6dcda66611f343e8ff25f34aaeb"))); @@ -61,7 +61,7 @@ public class ReduceReadsIntegrationTest extends WalkerTest { * * This bam is simplified to replicate the exact bug with the three provided intervals. */ - @Test(enabled = true) + @Test(enabled = false) public void testAddingReadAfterTailingTheStash() { String base = String.format("-T ReduceReads %s -npt -R %s -I %s", STASH_L, REF, STASH_BAM) + " -o %s "; executeTest("testAddingReadAfterTailingTheStash", new WalkerTestSpec(base, Arrays.asList("886b43e1f26ff18425814dc7563931c6"))); @@ -71,7 +71,7 @@ public class ReduceReadsIntegrationTest extends WalkerTest { * Divide by zero bug reported by GdA and users in the forum. Happens when the downsampler goes over a region where all reads get * filtered out. */ - @Test(enabled = true) + @Test(enabled = false) public void testDivideByZero() { String base = String.format("-T ReduceReads %s -npt -R %s -I %s", DIVIDEBYZERO_L, REF, DIVIDEBYZERO_BAM) + " -o %s "; executeTest("testDivideByZero", new WalkerTestSpec(base, Arrays.asList("93ffdc209d4cc0fc4f0169ca9be55cc2")));