From dcd13060e11278d40a4121122dccc961e7bb0c42 Mon Sep 17 00:00:00 2001 From: carneiro Date: Wed, 1 Jun 2011 16:26:32 +0000 Subject: [PATCH] created wiki page for Print Reads and changed help to match wiki. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5914 348d0f76-0448-11de-a6fe-93d51630548a --- .../broadinstitute/sting/gatk/walkers/PrintReadsWalker.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java index e20e96dee..07938d322 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java @@ -48,11 +48,11 @@ public class PrintReadsWalker extends ReadWalker { /** an optional argument to dump the reads out to a BAM file */ @Output(doc="Write output to this BAM filename instead of STDOUT") SAMFileWriter out; - @Argument(fullName = "readGroup", shortName = "readGroup", doc="Discard reads not belonging to the specified read group", required = false) + @Argument(fullName = "readGroup", shortName = "readGroup", doc="Exclude all reads with this read group from the output", required = false) String readGroup = null; - @Argument(fullName = "platform", shortName = "platform", doc="Discard reads not generated by the specified platform", required = false) + @Argument(fullName = "platform", shortName = "platform", doc="Exclude all reads with this platform from the output", required = false) String platform = null; // E.g. ILLUMINA, 454 - @Argument(fullName = "number", shortName = "n", doc="Outputs only the first n reads, discarding the rest", required = false) + @Argument(fullName = "number", shortName = "n", doc="Print the first n reads from the file, discarding the rest", required = false) int nReadsToPrint = -1; /**