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created wiki page for Print Reads and changed help to match wiki. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5914 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
carneiro 2011-06-01 16:26:32 +00:00
parent 8f6af299d8
commit dcd13060e1
1 changed files with 3 additions and 3 deletions
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6
java/src/org/broadinstitute/sting/gatk/walkers/PrintReadsWalker.java
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@ -48,11 +48,11 @@ public class PrintReadsWalker extends ReadWalker<SAMRecord, SAMFileWriter> {
/** an optional argument to dump the reads out to a BAM file */
@Output(doc="Write output to this BAM filename instead of STDOUT")
SAMFileWriter out;
@Argument(fullName = "readGroup", shortName = "readGroup", doc="Discard reads not belonging to the specified read group", required = false)
@Argument(fullName = "readGroup", shortName = "readGroup", doc="Exclude all reads with this read group from the output", required = false)
String readGroup = null;
@Argument(fullName = "platform", shortName = "platform", doc="Discard reads not generated by the specified platform", required = false)
@Argument(fullName = "platform", shortName = "platform", doc="Exclude all reads with this platform from the output", required = false)
String platform = null; // E.g. ILLUMINA, 454
@Argument(fullName = "number", shortName = "n", doc="Outputs only the first n reads, discarding the rest", required = false)
@Argument(fullName = "number", shortName = "n", doc="Print the first n reads from the file, discarding the rest", required = false)
int nReadsToPrint = -1;
/**