From dc07067265b652db92e9658a907e142fac86db87 Mon Sep 17 00:00:00 2001 From: Mark DePristo Date: Wed, 13 Jun 2012 17:06:08 -0400 Subject: [PATCH] Fix bug in incorrectly reporting relative paths in log --- public/java/test/org/broadinstitute/sting/BaseTest.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/java/test/org/broadinstitute/sting/BaseTest.java b/public/java/test/org/broadinstitute/sting/BaseTest.java index 3e3cf65f2..912ced2be 100755 --- a/public/java/test/org/broadinstitute/sting/BaseTest.java +++ b/public/java/test/org/broadinstitute/sting/BaseTest.java @@ -90,7 +90,7 @@ public abstract class BaseTest { protected static final String testDirRelative = "public/testdata/"; public static final File testDirFile = new File(testDirRelative); public static final String testDir = testDirFile.getAbsolutePath() + "/"; - protected static final String testDirRoot = testDirFile.getPath().replace(testDirRelative, ""); + protected static final String testDirRoot = testDir.replace(testDirRelative, ""); public static final String keysDataLocation = validationDataLocation + "keys/"; public static final String gatkKeyFile = CryptUtils.GATK_USER_KEY_DIRECTORY + "gsamembers_broadinstitute.org.key";