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Small correction to the unit test code from my last commit. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5572 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
droazen 2011-04-04 18:55:38 +00:00
parent a5acb0b7a6
commit db9908ec02
1 changed files with 2 additions and 3 deletions
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5
java/test/org/broadinstitute/sting/gatk/GenomeAnalysisEngineUnitTest.java
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@ -28,6 +28,7 @@ import org.broadinstitute.sting.BaseTest;
import org.broadinstitute.sting.commandline.ArgumentException; import org.broadinstitute.sting.commandline.ArgumentException;
import org.broadinstitute.sting.gatk.datasources.reads.SAMReaderID; import org.broadinstitute.sting.gatk.datasources.reads.SAMReaderID;
import org.broadinstitute.sting.commandline.Tags; import org.broadinstitute.sting.commandline.Tags;
import org.broadinstitute.sting.gatk.walkers.PrintReadsWalker;
import org.broadinstitute.sting.utils.GenomeLocSortedSet; import org.broadinstitute.sting.utils.GenomeLocSortedSet;
import org.testng.annotations.Test; import org.testng.annotations.Test;
@ -72,9 +73,7 @@ public class GenomeAnalysisEngineUnitTest extends BaseTest {
public void testEmptyIntervalSetHandling() throws Exception { public void testEmptyIntervalSetHandling() throws Exception {
GenomeAnalysisEngine testEngine = new GenomeAnalysisEngine(); GenomeAnalysisEngine testEngine = new GenomeAnalysisEngine();
WalkerManager walkerManager = new WalkerManager(); testEngine.setWalker(new PrintReadsWalker());
testEngine.setWalker(walkerManager.createByName("PrintReadsWalker"));
testEngine.setIntervals(new GenomeLocSortedSet(null)); testEngine.setIntervals(new GenomeLocSortedSet(null));
testEngine.validateSuppliedIntervals(); testEngine.validateSuppliedIntervals();