diff --git a/java/test/org/broadinstitute/sting/gatk/GenomeAnalysisEngineUnitTest.java b/java/test/org/broadinstitute/sting/gatk/GenomeAnalysisEngineUnitTest.java index 7242f88ec..49d5d5cea 100644 --- a/java/test/org/broadinstitute/sting/gatk/GenomeAnalysisEngineUnitTest.java +++ b/java/test/org/broadinstitute/sting/gatk/GenomeAnalysisEngineUnitTest.java @@ -28,6 +28,7 @@ import org.broadinstitute.sting.BaseTest; import org.broadinstitute.sting.commandline.ArgumentException; import org.broadinstitute.sting.gatk.datasources.reads.SAMReaderID; import org.broadinstitute.sting.commandline.Tags; +import org.broadinstitute.sting.gatk.walkers.PrintReadsWalker; import org.broadinstitute.sting.utils.GenomeLocSortedSet; import org.testng.annotations.Test; @@ -72,9 +73,7 @@ public class GenomeAnalysisEngineUnitTest extends BaseTest { public void testEmptyIntervalSetHandling() throws Exception { GenomeAnalysisEngine testEngine = new GenomeAnalysisEngine(); - WalkerManager walkerManager = new WalkerManager(); - testEngine.setWalker(walkerManager.createByName("PrintReadsWalker")); - + testEngine.setWalker(new PrintReadsWalker()); testEngine.setIntervals(new GenomeLocSortedSet(null)); testEngine.validateSuppliedIntervals();