From db9390811a293633690b004541188c82233dc360 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 22 Sep 2009 15:06:45 +0000
Subject: [PATCH] Package tool doesn't provide an error if classes listed in
 the package are not found, and classes were moved from playground to core.
 This step: correct the classes listed in the package. Next step: update the
 packaging tool to fail if class is not found.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1680 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/GenomeAnalysisTK.xml | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/packages/GenomeAnalysisTK.xml b/packages/GenomeAnalysisTK.xml
index f93ba0680..feecdbef6 100644
--- a/packages/GenomeAnalysisTK.xml
+++ b/packages/GenomeAnalysisTK.xml
@@ -21,18 +21,18 @@
     <class>org.broadinstitute.sting.gatk.walkers.indels.MismatchIntervalWalker</class>
     <class>org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker</class>
     <!-- Variant filtration -->
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VariantFiltrationWalker</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.VariantFiltrationWalker</class>
     <!-- Single sample genotyper -->
     <class>org.broadinstitute.sting.gatk.walkers.genotyper.SingleSampleGenotyper</class>
     <!-- And the filters -->
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.IVFSecondaryBases</class>
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECFisherStrand</class>
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECAlleleBalance</class>
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECDepthOfCoverage</class>
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECLodThreshold</class>
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECMappingQualityZero</class>
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECIndelArtifact</class>
-    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECClusteredSnps</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.IVFSecondaryBases</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.VECFisherStrand</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.VECAlleleBalance</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.VECDepthOfCoverage</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.VECLodThreshold</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.VECMappingQualityZero</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.VECIndelArtifact</class>
+    <class>org.broadinstitute.sting.gatk.walkers.filters.VECClusteredSnps</class>
   </dependencies>
   <resources>
     <!-- GATK sample code and build scripts -->