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Package tool doesn't provide an error if classes listed in the package are not found, and classes were moved from playground to core. 

This step: correct the classes listed in the package.
Next step: update the packaging tool to fail if class is not found.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1680 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-09-22 15:06:45 +00:00
parent 83a9eebcc4
commit db9390811a
1 changed files with 9 additions and 9 deletions
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18
packages/GenomeAnalysisTK.xml
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@ -21,18 +21,18 @@
<class>org.broadinstitute.sting.gatk.walkers.indels.MismatchIntervalWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker</class>
<!-- Variant filtration -->
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VariantFiltrationWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VariantFiltrationWalker</class>
<!-- Single sample genotyper -->
<class>org.broadinstitute.sting.gatk.walkers.genotyper.SingleSampleGenotyper</class>
<!-- And the filters -->
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.IVFSecondaryBases</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECFisherStrand</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECAlleleBalance</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECDepthOfCoverage</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECLodThreshold</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECMappingQualityZero</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECIndelArtifact</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECClusteredSnps</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.IVFSecondaryBases</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECFisherStrand</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECAlleleBalance</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECDepthOfCoverage</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECLodThreshold</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECMappingQualityZero</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECIndelArtifact</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECClusteredSnps</class>
</dependencies>
<resources>
<!-- GATK sample code and build scripts -->