First (very rough) version of a haplotype-based resolver of alleles from two provided VCF files. It works well on standard cases (e.g. MNP vs. 2 SNPs) but still needs to be tested more thoroughly and I need to add support for multi-allelics (although I know how to do that now). Being committed in private for Ryan's benefit, but no one else should be using it now.

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Eric Banks 2012-04-26 16:30:22 -04:00

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