diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variants/VariantFiltrationWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/variants/VariantFiltrationWalker.java index 1303d9341..832c7b884 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variants/VariantFiltrationWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/variants/VariantFiltrationWalker.java @@ -132,7 +132,8 @@ public class VariantFiltrationWalker extends LocusWalker { } } - swriters.get(STUDY_NAME).print("inDbSNP\tinHapMap\tisHet\n"); + if (LEARNING) + swriters.get(STUDY_NAME).print("inDbSNP\tinHapMap\tisHet\n"); } catch (FileNotFoundException e) { throw new StingException(String.format("Could not open file(s) for writing")); }