From dabdeb729e22958e7e4202131d4a44fc73546186 Mon Sep 17 00:00:00 2001 From: ebanks Date: Wed, 15 Dec 2010 17:01:38 +0000 Subject: [PATCH] Eric broke the build. Eric broke the build. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4847 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting}/BaseTransitionTableCalculatorJavaWalker.java | 0 .../sting/playground/gatk/walkers/LocusMismatchWalker.java | 1 - 2 files changed, 1 deletion(-) rename {java/src/org/broadinstitute/sting/oneoffprojects/walkers => archive/java/src/org/broadinstitute/sting}/BaseTransitionTableCalculatorJavaWalker.java (100%) diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/BaseTransitionTableCalculatorJavaWalker.java b/archive/java/src/org/broadinstitute/sting/BaseTransitionTableCalculatorJavaWalker.java similarity index 100% rename from java/src/org/broadinstitute/sting/oneoffprojects/walkers/BaseTransitionTableCalculatorJavaWalker.java rename to archive/java/src/org/broadinstitute/sting/BaseTransitionTableCalculatorJavaWalker.java diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java index 17a6ae126..58632c708 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/LocusMismatchWalker.java @@ -80,7 +80,6 @@ public class LocusMismatchWalker extends LocusWalker implements public void initialize() { UnifiedArgumentCollection uac = new UnifiedArgumentCollection(); - uac.baseModel = BaseMismatchModel.THREE_STATE; uac.ALL_BASES_MODE = true; ug = new UnifiedGenotyperEngine(getToolkit(), uac);