Using absolute paths in generated diff commands, to ease running them from any directory.

2014-02-27 04:43:29 +08:00 · 2014-02-27 04:43:29 +08:00 · da587d48ed
parent c163e6d0d2
commit da587d48ed
1 changed files with 1 additions and 1 deletions
--- a/public/gatk-framework/src/test/java/org/broadinstitute/sting/MD5DB.java
+++ b/public/gatk-framework/src/test/java/org/broadinstitute/sting/MD5DB.java
@ -120,7 +120,7 @@ public class MD5DB {
        for ( String dir : Arrays.asList(GLOBAL_MD5_DB_DIR, LOCAL_MD5_DB_DIR)) {
            File f = getFileForMD5(md5, dir);
            if ( f.exists() && f.canRead() )
-                return f.getPath();
+                return f.getAbsolutePath();
        }

        return valueIfNotFound;