From 7b29c55eb6e4113ff2f9e07c490d8451fd54f7e7 Mon Sep 17 00:00:00 2001
From: Laura Gauthier <gauthier@broadinstitute.org>
Date: Fri, 17 Jul 2015 17:26:56 -0400
Subject: [PATCH] Updated TandemRepeatAnnotator docs

---
 .../gatk/tools/walkers/annotator/TandemRepeatAnnotator.java  | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/annotator/TandemRepeatAnnotator.java b/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/annotator/TandemRepeatAnnotator.java
index a781d51c7..9d5ec3608 100644
--- a/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/annotator/TandemRepeatAnnotator.java
+++ b/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/annotator/TandemRepeatAnnotator.java
@@ -76,11 +76,6 @@ import java.util.*;
  *
  * <p>A tandem repeat unit is composed of one or more nucleotides that are repeated multiple times in series. Repetitive sequences are difficult to map to the reference because they are associated with multiple alignment possibilities. Knowing the number of repeat units in a set of tandem repeats tells you the number of different positions the tandem repeat can be placed in. The observation of many tandem repeat units multiplies the number of possible representations that can be made of the region.
  *
- * <h3>Caveat</h3>
- * <ul>
- *     <li>This annotation is currently not compatible with HaplotypeCaller.</li>
- * </ul>
- *
  */
 public class TandemRepeatAnnotator extends InfoFieldAnnotation implements StandardUGAnnotation, ActiveRegionBasedAnnotation {
     private final static Logger logger = Logger.getLogger(TandemRepeatAnnotator.class);