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Fixed logic 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@84 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-03-17 22:20:03 +00:00
parent 1aa3958644
commit d9fa04f65c
1 changed files with 1 additions and 1 deletions
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2
playground/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java
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@ -104,7 +104,7 @@ public class GenomeAnalysisTK extends CommandLineProgram {
}
engine.setSafetyChecking(! UNSAFE.toLowerCase().equals("true"));
engine.setSortOnFly(! ENABLED_SORT_ON_FLY.toLowerCase().equals("true"));
engine.setSortOnFly(ENABLED_SORT_ON_FLY.toLowerCase().equals("true"));
engine.initialize(ENABLED_THREADED_IO.toLowerCase().equals("true"));
//engine.testReference();