From 204cad3646023f8d4cdfe661285c1def11bcb73d Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Fri, 8 Jan 2016 10:27:56 -0500 Subject: [PATCH] Remove "mem_free" from resident memory request params for Queue because it doesn't work and wouldn't actually reserve memory anyway --- .../pipeline/examples/ExampleUnifiedGenotyperQueueTest.scala | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/protected/gatk-queue-extensions-distribution/src/test/scala/org/broadinstitute/gatk/queue/pipeline/examples/ExampleUnifiedGenotyperQueueTest.scala b/protected/gatk-queue-extensions-distribution/src/test/scala/org/broadinstitute/gatk/queue/pipeline/examples/ExampleUnifiedGenotyperQueueTest.scala index 33066ffb0..ffba91845 100644 --- a/protected/gatk-queue-extensions-distribution/src/test/scala/org/broadinstitute/gatk/queue/pipeline/examples/ExampleUnifiedGenotyperQueueTest.scala +++ b/protected/gatk-queue-extensions-distribution/src/test/scala/org/broadinstitute/gatk/queue/pipeline/examples/ExampleUnifiedGenotyperQueueTest.scala @@ -109,7 +109,8 @@ class ExampleUnifiedGenotyperQueueTest { } @DataProvider(name="resMemReqParams") - def getResMemReqParam = Array(Array("mem_free"), Array("virtual_free")).asInstanceOf[Array[Array[Object]]] + //mem_free no longer works on GridEngine8 configuration; UGER will require "m_mem_free" instead of "virtual_free" + def getResMemReqParam = Array(Array("virtual_free")).asInstanceOf[Array[Array[Object]]] @Test(dataProvider = "resMemReqParams", timeOut=36000000) def testUnifiedGenotyperResMemReqParam(reqParam: String) {